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ABOUT THIS RECORD

ID: MNEST040316
species: Brassica rapa
miRNA family: MIR167
source: miRBase, original name: bra-MIR167c (MI0010654)

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTA

miRNA*
GATCATGTTCGCAGTTTCACC

mismatches: 1
bulges: 0

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pre-miRNA
GGTGTACAGGCATCTGATGAAGCTGCCAGCATGATCTAATTAACTTTCTTTCTCTGTTGATTTTATGACAATGGAAAAGAGATGAGTGTCGATTAGATCA
TGTTCGCAGTTTCACC
CATTGACTGTCGCACC


dot-bracket secondary structure
(((((((((.((...(.(((((((((.(((((((((((((..((.(((..(((((.....((((((....)))))).))))).))).))..)))))))))
)))).))))))))).)
...)).)))).)))))



SIMILARITIES
miRBase bra-MIR167b: 6e-71

PMRD bra-miR167c: 6e-71

microPC miR167: 1e-25
UniProt no hits

RFAM MIR167_1: 2e-34

Identical with: bna-MIR167a from miRBase (MNEST040268)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned, Northern

references

[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"




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