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ABOUT THIS RECORD

ID: MNEST040319
species: Brassica rapa
miRNA family: MIR171
source: miRBase, original name: bra-MIR171b (MI0010657)

Taxonomy by NCBI:
Brassica rapa Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGAGCCGTGCCAATATCACG

miRNA*
AGATATTAGTGCGGTTCAATC

mismatches: 4
bulges: 0

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pre-miRNA
TGGTCAAGCGAGATATTAGTGCGGTTCAATCAAATAGTCTCACTCTTAGTTGATAGAGATTGATTTTGTTCGATTGAGCCGTGCCAATATCACGCATATA
ACCA


dot-bracket secondary structure
.(((...(((.((((((.(..((((((((((.(((((..(((.((((........)))).)))..))))).))))))))))..).)))))).))).....
))).



SIMILARITIES
miRBase bna-MIR171a: 2e-54

PMRD bra-miR171b: 2e-54

microPC miR171: 0.0000003
UniProt no hits

RFAM MIR171_1: 0.000000000000006

Identical with: bna-miR171a from PMRD (MNEST048363)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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evidence: cloned, Northern

references

[1] He XF, Fang YY, Feng L, Guo HS, FEBS Lett. 582:2445-2452(2008)., "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"




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