ABOUT THIS RECORDspecies: Ricinus communis
miRNA family: MIR156
source: miRBase, original name: rco-MIR156d (MI0013373)
Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACCTCTCTTTCTGTCAGC mismatches: 1 bulges: 2 |
pre-miRNA
GAGACTGACAGAAGAGAGTGAGCACACGCAGGCAATTGTATGGAAGCCATACCACTGCAGGTGCGTGCTCACCTCTCTTTCTGTCAGCTTCCA
dot-bracket secondary structure
((..(((((((((((((((((((((.(((..(((...((((((...))))))...)))..))).))))))).))))).)))))))))..))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
GAGACTGACAGAAGAGAGTGAGCACACGCAGGCAATTGTATGGAAGCCATACCACTGCAGGTGCGTGCTCACCTCTCTTTCTGTCAGCTTCCA
dot-bracket secondary structure
((..(((((((((((((((((((((.(((..(((...((((((...))))))...)))..))).))))))).))))).)))))))))..))..
SIMILARITIES| miRBase tcc-MIR156c: 2e-23 PMRD vvi-miR156d: 1e-18 microPC miR156: 0.00000000002 | UniProt no hits RFAM mir-156: 1e-40 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR
references
[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"
