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ABOUT THIS RECORD

ID: MNEST040340
species: Ricinus communis
miRNA family: MIR160
source: miRBase, original name: rco-MIR160b (MI0013380)

Taxonomy by NCBI:
Ricinus communis Ricinus Acalypheae Acalyphoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGTATGCCA

miRNA*
GCGTGCGAGGAGCCAAGCATA

mismatches: 2
bulges: 0

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pre-miRNA
GGTTATGCCTGGCTCCCTGTATGCCACAAGCTAGAGTTCATTCCCTTCCATGGATTGGCTATTGCCGGTGGCGTGCGAGGAGCCAAGCATACTCTC

dot-bracket secondary structure
(..(((((.(((((((.((((((((((..((...(((.((.(((.......))).)))))...))..)))))))))).))))))).)))))..)..


SIMILARITIES
miRBase vvi-MIR160c: 8e-17

PMRD vvi-miR160c: 8e-17

microPC miR160: 0.0000003
UniProt no hits

RFAM mir-160: 9e-45

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: RT-PCR

references

[1] Zeng C, Wang W, Zheng Y, Chen X, Bo W, Song S, Zhang W, Peng M, Nucleic Acids Res. 38:981-995(2010)., "Conservation and divergence of microRNAs and their functions in Euphorbiaceous plants"




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