ABOUT THIS RECORDspecies: Lotus japonicus
miRNA family: MIR2111
source: miRBase, original name: lja-MIR2111 (MI0015371)
Taxonomy by NCBI:
Lotus japonicus Lotus Loteae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATCTGCATCCTGAGGTTTA miRNA* GTCCTTAGGATGCAGATTACC mismatches: 1 bulges: 0 |
pre-miRNA
TCAAACCTACTTGGATGAGTCAGTATAGGTTTAGGATCAGGTAATCTGCATCCTGAGGTTTAAAACAATAGGTTTATTGTGTCTAGTCCTTAGGATGCAG
ATTACCGCTTCCTAATGTTATCACCAATAGATGGAGCATTTAAATCAGTTTGA
dot-bracket secondary structure
((((((....(((((((..(((.(((.(((((((((...(((((((((((((((((((.(((..((((((....))))))...))).)))))))))))))
))))))...)))))).......))).)))..)))..)))))))....))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ, Plant Physiol. 151:2120-2132(2009)., "Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing"
TCAAACCTACTTGGATGAGTCAGTATAGGTTTAGGATCAGGTAATCTGCATCCTGAGGTTTAAAACAATAGGTTTATTGTGTCTAGTCCTTAGGATGCAG
ATTACCGCTTCCTAATGTTATCACCAATAGATGGAGCATTTAAATCAGTTTGA
dot-bracket secondary structure
((((((....(((((((..(((.(((.(((((((((...(((((((((((((((((((.(((..((((((....))))))...))).)))))))))))))
))))))...)))))).......))).)))..)))..)))))))....))))))
SIMILARITIES| miRBase mtr-MIR2111s: 2e-21 PMRD bna-miR2111b: 0.0000001 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Hsieh LC, Lin SI, Shih AC, Chen JW, Lin WY, Tseng CY, Li WH, Chiou TJ, Plant Physiol. 151:2120-2132(2009)., "Uncovering small RNA-mediated responses to phosphate deficiency in Arabidopsis by deep sequencing"
