miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST040648
species:
Medicago truncatula
miRNA family:
MIR156
source:
miRBase, original name:
mtr-MIR156
(
MI0001752
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGAGAGCACA
miRNA*
AGCTCTTTCTTCTTCTCTCATT
mismatches:
4
bulges:
1
View larger
pre-miRNA
AGCCATGAATCAGTCCGAGA
TGACAGAAGAGAGAGAGCACA
CCCACCTGATTACAAGTAACAAAAAACTACCAACTATCAACATTTTGTCTACTATGAAG
AAAATCACATGTCTAGACTATAGTTACGAATGGAAGATACATTCAATGATGTTTATGAAAATTTGAGACGGTCGAGGACTATAGTTACTCTATCGCATAC
ATTTAATGACAAAAAAAATTGTGTACTCTTATTTATTTTCAATACATCTTCATTCAATTTCTATGCAAGAATCAAAATGCAGTATAAAAAATTGCATTCA
ATATCATGGTAAAAAAATTGTTCAAAAAAAGTAAATATCATGGTAAAAAAATCATTAGATTTTGCAATAAGTAAGAGTCAAGTTTTACCTTGTGAGGAAT
TCCTCCCAACAGAATCATGGG
AGCTCTTTCTTCTTCTCTCATT
GTGCCCTGCCAGTCTCC
dot-bracket secondary structure
......((..(((..((.((
(((.((((((((((((((...
((((..(((((...........((((((..............(((((((.....(((..
....))).((((.((((((((((((..(((((.......)))))..((((((((((....))...)))).))))..))))))))....))))..))))..
.......))))))).......((.((((((((((((...........................(((((((.((..((((((((.......))))))))..
.((((((((((........................))))))))))............)))))))))))))))))))))))))))))...(((.((((...
.)))).)))...)))))))))
.)))))))).)))))).)))))
.))..)))....))...
SIMILARITIES
miRBase
zma-MIR156j
:
0.00002
PMRD
cpt-miR156b
:
0.0000004
microPC
miR157
:
0.0004
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454, Northern
references
[
1
] Dezulian T, Palatnik JF, Huson DH, Weigel D,
http://genomebiology.com/2005/6/11/p13 (2005).
,
"Conservation and divergence of microRNA families in plants"
[
2
] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R,
New Phytol. 184:85-98(2009).
,
"Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"