ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR156
source: miRBase, original name: mtr-MIR156d (MI0005585)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACTCATCTTTCTGTCAAA mismatches: 0 bulges: 2 |
pre-miRNA
GAAATTGACAGAAGAGAGTGAGCACATAGACACTCGGTATAGATGTATATCGTTGCCTTTGCGTGCTCACTCATCTTTCTGTCAAATTCC
dot-bracket secondary structure
(((.(((((((((((((((((((((.((((..(.(((((((....)))))))..)..)))).)))))))))).)).))))))))).))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Bonnet E, Unpublished (2007).,
GAAATTGACAGAAGAGAGTGAGCACATAGACACTCGGTATAGATGTATATCGTTGCCTTTGCGTGCTCACTCATCTTTCTGTCAAATTCC
dot-bracket secondary structure
(((.(((((((((((((((((((((.((((..(.(((((((....)))))))..)..)))).)))))))))).)).))))))))).))).
SIMILARITIES| miRBase rco-MIR156b: 0.0000000003 PMRD ptc-miR156e: 0.00000007 microPC miR156: 0.00002 | UniProt no hits RFAM mir-156: 2e-39 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Bonnet E, Unpublished (2007).,
