ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR157
source: miRBase, original name: mtr-MIR156e (MI0005595)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGAGCAC miRNA* GCTCTCTATGCTTCTGTCATCA mismatches: 1 bulges: 1 |
pre-miRNA
GGTTGTTGACAGAAGATAGAGAGCACAGATGATGATATGCATTTATATATATATATATATATATATATATATATATATATATATATATATATATATATGA
GGAGCTGGAGCTGCATGGAGATGAATTTTGTGCATATCACTCCTTTGTGCTCTCTATGCTTCTGTCATCACC
dot-bracket secondary structure
(((.(.(((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((....)))))))))))))))))))))))))))
(.(((....))).)...............)))))))))).)).)))))))))))))).))))))))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern
references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
GGTTGTTGACAGAAGATAGAGAGCACAGATGATGATATGCATTTATATATATATATATATATATATATATATATATATATATATATATATATATATATGA
GGAGCTGGAGCTGCATGGAGATGAATTTTGTGCATATCACTCCTTTGTGCTCTCTATGCTTCTGTCATCACC
dot-bracket secondary structure
(((.(.(((((((((((((((((((((((.(((((((((((((((((((((((((((((((((((((((....)))))))))))))))))))))))))))
(.(((....))).)...............)))))))))).)).)))))))))))))).))))))))).))))
SIMILARITIES| miRBase gma-MIR156d: 4e-17 PMRD mtr-miR156e: 3e-36 microPC miR157: 0.0000000000002 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern
references
[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
