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ABOUT THIS RECORD

ID: MNEST040653
species: Medicago truncatula
miRNA family: MIR157
source: miRBase, original name: mtr-MIR156f (MI0005605)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGACAGAAGATAGAGAGCAC

miRNA*
GCTCTCTGCTCTTCTGCCAACA

mismatches: 1
bulges: 1

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pre-miRNA
GTTTGTTGACAGAAGATAGAGAGCACATCTGAACAAACACAAAAGACATTGTGTTTGAACAGTTGTGTGCTCTCTGCTCTTCTGCCAACATACT

dot-bracket secondary structure
((.(((((.((((((((((((((((((((((..(((((((((......)))))))))..)))..)))))))))))).))))))).))))).)).


SIMILARITIES
miRBase tcc-MIR156f: 0.0000000003

PMRD mtr-miR156f: 2e-48

microPC miR157: 0.000004
UniProt no hits

RFAM no hits

Identical with: mtr-miR156f from PMRD (MNEST048696)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern

references

[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"




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