ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR157
source: miRBase, original name: mtr-MIR156g (MI0005607)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGACAGAAGATAGAGGGCAC miRNA* GCTCTCTAGACTTCTGTCATCA mismatches: 2 bulges: 1 |
pre-miRNA
GGTTGTTGACAGAAGATAGAGGGCACTAAGGATGATATGCATACACATATATATACAACATGGAGGAGGAGCTTAATTGCATTTCATTTCCTTTGTGCTC
TCTAGACTTCTGTCATCACC
dot-bracket secondary structure
(((.(.(((((((((.((((((((((.(((((..(((((......)))))...............((((.((......)).))))...))))).))))))
))))..))))))))).))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Bonnet E, Unpublished (2007).,
GGTTGTTGACAGAAGATAGAGGGCACTAAGGATGATATGCATACACATATATATACAACATGGAGGAGGAGCTTAATTGCATTTCATTTCCTTTGTGCTC
TCTAGACTTCTGTCATCACC
dot-bracket secondary structure
(((.(.(((((((((.((((((((((.(((((..(((((......)))))...............((((.((......)).))))...))))).))))))
))))..))))))))).))))
SIMILARITIES| miRBase aly-MIR157c: 0.0000000000004 PMRD mtr-miR157: 2e-58 microPC miR157: 7e-58 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Bonnet E, Unpublished (2007).,
