ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR160
source: miRBase, original name: mtr-MIR160c (MI0005576)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGAATGCCA miRNA* GCATGAAGGGAGCCATGCAGG mismatches: 3 bulges: 0 |
pre-miRNA
TCGCTTGCCTGGCTCCCTGAATGCCATCTGAGAAGCTTGTCAAAACGATTGGCAACCTTTCCATTTGGCATGAAGGGAGCCATGCAGGCTGC
dot-bracket secondary structure
..((((((.(((((((((..((((((..((..(((.(((((((.....))))))).)))..))..))))))..))))))))).))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
TCGCTTGCCTGGCTCCCTGAATGCCATCTGAGAAGCTTGTCAAAACGATTGGCAACCTTTCCATTTGGCATGAAGGGAGCCATGCAGGCTGC
dot-bracket secondary structure
..((((((.(((((((((..((((((..((..(((.(((((((.....))))))).)))..))..))))))..))))))))).))))))...
SIMILARITIES| miRBase ptc-MIR160e: 0.000000000000001 PMRD ptc-miR160e: 0.000000000000001 microPC no hits | UniProt no hits RFAM mir-160: 5e-43 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
