ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR162
source: miRBase, original name: mtr-MIR162 (MI0001738)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGATAAACCTCTGCATCCAG miRNA* GGATGCAGCGGTTCATCGATC mismatches: 2 bulges: 0 |
pre-miRNA
AGATGAGGTGAAGTTCGTCACTGGATGCAGCGGTTCATCGATCTGTTCCTGAATTTTGTTTGTCTCGTAAAACAAACATGAATCGGTCGATAAACCTCTG
CATCCAGCGCTCACTTTCCCCTCT
dot-bracket secondary structure
....((((.(((((..(.(.((((((((((.((((.(((((((.((((.((...(((((((........))))))))).)))).))))))).)))).)))
))))))).))..)))))..)))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[3] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
AGATGAGGTGAAGTTCGTCACTGGATGCAGCGGTTCATCGATCTGTTCCTGAATTTTGTTTGTCTCGTAAAACAAACATGAATCGGTCGATAAACCTCTG
CATCCAGCGCTCACTTTCCCCTCT
dot-bracket secondary structure
....((((.(((((..(.(.((((((((((.((((.(((((((.((((.((...(((((((........))))))))).)))).))))))).)))).)))
))))))).))..)))))..)))).
SIMILARITIES| miRBase gma-MIR162: 0.000000000000002 PMRD mtr-miR162d: 4e-44 microPC miR162: 4e-44 | UniProt no hits RFAM MIR162_2: 1e-44 |
Identical with: miR162 from microPC (MNEST046557) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern
references
[1] Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA, Cell Res. 15:336-360(2005)., "Identification and characterization of new plant microRNAs using EST analysis"
[2] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[3] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
