ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR166
source: miRBase, original name: mtr-MIR166b (MI0005575)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCTA miRNA* GGAATGTTGTTTGGCTCGAGG mismatches: 4 bulges: 0 |
pre-miRNA
GTTGATGGGAATGTTGTTTGGCTCGAGGTAATAACTAACTCAATTTCTTTGTCTTTGAAAGCTTTTCTTTGTTTCACTCTTTTTGATTCTTAGAAAGTTG
AAACTAAGTGAGCTTTAAAGGTTTGATTTTGATGTGTGATTATCTCGGACCAGGCTTCATTCCTACCAAC
dot-bracket secondary structure
((((.((((((((..((((((..(((((((((.....((((((..((....((((((((.((((..(((.((((((..((((((((...)))))))).))
)))).))).))))))))))))...))..)))).))...)))))))))..))))))..)))))))).))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
GTTGATGGGAATGTTGTTTGGCTCGAGGTAATAACTAACTCAATTTCTTTGTCTTTGAAAGCTTTTCTTTGTTTCACTCTTTTTGATTCTTAGAAAGTTG
AAACTAAGTGAGCTTTAAAGGTTTGATTTTGATGTGTGATTATCTCGGACCAGGCTTCATTCCTACCAAC
dot-bracket secondary structure
((((.((((((((..((((((..(((((((((.....((((((..((....((((((((.((((..(((.((((((..((((((((...)))))))).))
)))).))).))))))))))))...))..)))).))...)))))))))..))))))..)))))))).))))
SIMILARITIES| miRBase tcc-MIR166b: 0.000000002 PMRD pga-miR166: 0.00000003 microPC miR166: 0.00003 | UniProt no hits RFAM mir-166: 3e-92 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
