ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR166
source: miRBase, original name: mtr-MIR166f (MI0005614)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCTC miRNA* GGAATGAGGTTTGTTCCAAGA mismatches: 4 bulges: 0 |
pre-miRNA
TGTTTGGAATGAGGTTTGTTCCAAGATCATCACACATCATGTTTCTTCTTCCCTTTCAATAATTCTTGATTAATTTATGTTCATACATCTATATATATAT
CTATATATATTATCAAGTCATTACATGCATGGGATGAGATATTGAGAGTGATCTCGGACCAGGCTTCATTCCTCACACC
dot-bracket secondary structure
(((..(((((((((((((.(((.(((((((......(((((((((....((((...((.((((.((((((......((((....)))).((((((((...
.))))))))..))))))..))))..))...)))).)))))).)))..))))))).))).)))))))))))))..)))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
TGTTTGGAATGAGGTTTGTTCCAAGATCATCACACATCATGTTTCTTCTTCCCTTTCAATAATTCTTGATTAATTTATGTTCATACATCTATATATATAT
CTATATATATTATCAAGTCATTACATGCATGGGATGAGATATTGAGAGTGATCTCGGACCAGGCTTCATTCCTCACACC
dot-bracket secondary structure
(((..(((((((((((((.(((.(((((((......(((((((((....((((...((.((((.((((((......((((....)))).((((((((...
.))))))))..))))))..))))..))...)))).)))))).)))..))))))).))).)))))))))))))..)))..
SIMILARITIES| miRBase tcc-MIR166c: 0.0000000002 PMRD mtr-miR166c: 4e-51 microPC miR166: 0.0000006 | UniProt no hits RFAM mir-166: 1e-54 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
