ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR166
source: miRBase, original name: mtr-MIR166g (MI0005618)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGAGG mismatches: 4 bulges: 0 |
pre-miRNA
TTTGAGGGGAATGTTGTCTGGCTCGAGGACGCTTTCTTCTCGATCTAATGCAAATTTGTGGTCATGGATTGTAAAGTATTCTCGGACCAGGCTTCATTCC
CCCCAAT
dot-bracket secondary structure
.(((.((((((((..((((((..((((((..((((.....(((((((.((((....))))....))))))).))))..))))))..))))))..))))))
)).))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
TTTGAGGGGAATGTTGTCTGGCTCGAGGACGCTTTCTTCTCGATCTAATGCAAATTTGTGGTCATGGATTGTAAAGTATTCTCGGACCAGGCTTCATTCC
CCCCAAT
dot-bracket secondary structure
.(((.((((((((..((((((..((((((..((((.....(((((((.((((....))))....))))))).))))..))))))..))))))..))))))
)).))).
SIMILARITIES| miRBase ptc-MIR166c: 0.000000000001 PMRD mtr-miR166d: 9e-48 microPC miR166: 4e-50 | UniProt no hits RFAM mir-166: 7e-55 |
Identical with: miR166 from microPC (MNEST046212) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
