ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR169
source: miRBase, original name: mtr-MIR169a (MI0001741)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGA miRNA* GGCAAGTTGTCCTTGGCTATG mismatches: 4 bulges: 0 |
pre-miRNA
AAGAGGCAGAGAGAGTAATGCAGCCAAGGATGACTTGCCGACAACATTGGCGAATGTTCATGTGATTTCTGCCTCATTGTGCCGGCAAGTTGTCCTTGGC
TATGTTAGTCTCTCATCTTCT
dot-bracket secondary structure
.(((((..((((((.((((..(((((((((..((((((((...(((..((((((...((....)).))).)))....)))..))))))))..))))))))
)..)))).))))))..)))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
AAGAGGCAGAGAGAGTAATGCAGCCAAGGATGACTTGCCGACAACATTGGCGAATGTTCATGTGATTTCTGCCTCATTGTGCCGGCAAGTTGTCCTTGGC
TATGTTAGTCTCTCATCTTCT
dot-bracket secondary structure
.(((((..((((((.((((..(((((((((..((((((((...(((..((((((...((....)).))).)))....)))..))))))))..))))))))
)..)))).))))))..)))))
SIMILARITIES| miRBase mtr-MIR169b: 1e-59 PMRD mtr-miR169a: 2e-64 microPC miR169: 0.00002 | UniProt no hits RFAM MIR169_2: 0.000007 |
Identical with: mtr-miR169a from PMRD (MNEST048717) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454, Northern
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"
