ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR171
source: miRBase, original name: mtr-MIR171f (MI0005627)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGAGCCGTGCCAATATCACG miRNA* AGATATTGGTGCGGTTCAATC mismatches: 3 bulges: 0 |
pre-miRNA
GATGAGATATTGGTGCGGTTCAATCAGAAGGCAGTGCTTTTATAATTCAAAAAGCTCTGTGTTATTTGATTGAGCCGTGCCAATATCACGTGTTA
dot-bracket secondary structure
.(((.((((((((..((((((((((((((.((((.((((((........)))))).)))).)..)))))))))))))..)))))))).)))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Bonnet E, Unpublished (2007).,
GATGAGATATTGGTGCGGTTCAATCAGAAGGCAGTGCTTTTATAATTCAAAAAGCTCTGTGTTATTTGATTGAGCCGTGCCAATATCACGTGTTA
dot-bracket secondary structure
.(((.((((((((..((((((((((((((.((((.((((((........)))))).)))).)..)))))))))))))..)))))))).)))....
SIMILARITIES| miRBase gma-MIR171c: 4e-31 PMRD vvi-miR171c: 0.000000001 microPC miR171: 0.00000002 | UniProt no hits RFAM MIR171_1: 9e-48 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Bonnet E, Unpublished (2007).,
