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ABOUT THIS RECORD

ID: MNEST040702
species: Medicago truncatula
miRNA family: MIR172
source: miRBase, original name: mtr-MIR172 (MI0005600)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGAATCCTGATGATGCTGCAG

miRNA*
GGAGCATCATCAGGATTCACA

mismatches: 3
bulges: 0

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pre-miRNA
GCCGGTGGAGCATCATCAGGATTCACAAGATTTTGAAGGGTTTAATTTGTTTTGATTGTTTCAAATAGATTAGCCCTTTGACATATGAGAATCCTGATGA
TGCTGCAG
CTGCA


dot-bracket secondary structure
((.(.((.((((((((((((((((.((..((.(..(((((((.(((((((((.((.....))))))))))))))))))..).)).)).))))))))))))
)))).)).
).)).



SIMILARITIES
miRBase ath-MIR172c: 0.00000009

PMRD ath-miRf11051-akr: 0.00000009

microPC miR172: 0.00009
UniProt no hits

RFAM mir-172: 2e-58

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454, Northern

references

[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"




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