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ABOUT THIS RECORD

ID: MNEST040703
species: Medicago truncatula
miRNA family: MIR159
source: miRBase, original name: mtr-MIR319 (MI0001751)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGACTGAAGGGAGCTCCC

miRNA*
GAGCTTCCTTCAGTCCACTC

mismatches: 2
bulges: 0

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pre-miRNA
ATTATTAGAAATAGATGAAGAGAGCTTCCTTCAGTCCACTCATGGAAGGGTAAGGGGTTTGAATTACCTGCTGACTCATTGATTCAAACACAATAGACAA
TTATGGGGTTATGCTATTGTGAATGTGTGAATGATGCAGGAGGTGAATTTCTTCCTTTTCTTCTTTGCTTGGACTGAAGGGAGCTCCCTTTTTCTATTTA
TAAATTA


dot-bracket secondary structure
....(((.(((((((.((((.(((((((((((((((((..((.(((((((.((((((...((.((((((.(((..(((((.((.((..((((((((..((
((....))))...))))))))..)).)).)))))..))).)))))).))..))))))))))))).))..))))))))))))))))).)))).))))))).
)))....



SIMILARITIES
miRBase vvi-MIR319f: 4e-36

PMRD vvi-miR319f: 4e-36

microPC miR319: 0.000003
UniProt no hits

RFAM MIR159: 1e-104

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454

references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"




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