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ABOUT THIS RECORD

ID: MNEST040704
species: Medicago truncatula
miRNA family: MIR159
source: miRBase, original name: mtr-MIR319b (MI0005596)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGGACTGAAGGGAGCTCCC

miRNA*
GAGCTTTCTTTAGTCCACTC

mismatches: 4
bulges: 0

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pre-miRNA
TAAGAGAGCTTTCTTTAGTCCACTCATGGGTGACAATAAGATTTCAATTAGCTGCTGACTCATTCATCCAAATGTTGAGTAAAATATATAGAAACATATA
CTCATCAAATGAGTGAATGATGCGGGAGACAAATTGAATCTTAAGTTTCCTATACTTGGACTGAAGGGAGCTCCCTTTTC


dot-bracket secondary structure
.(((.(((((..((((((((((...(((((.(((..(((((((.(((((.(((.(((..(((((((..((..((.((((((.................))
)))).))..))..)))))))..))).)).).)))))))))))).))).)))))...))))))))))..))))).)))...



SIMILARITIES
miRBase gma-MIR319b: 7e-59

PMRD gma-miR319b: 7e-59

microPC miR319: 1e-51
UniProt no hits

RFAM MIR159: 3e-98

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454

references

[1] Bonnet E, Unpublished (2007).,
[2] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R, New Phytol. 184:85-98(2009)., "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"




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