miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST040704
species:
Medicago truncatula
miRNA family:
MIR159
source:
miRBase, original name:
mtr-MIR319b
(
MI0005596
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGGACTGAAGGGAGCTCCC
miRNA*
GAGCTTTCTTTAGTCCACTC
mismatches:
4
bulges:
0
View larger
pre-miRNA
TAAGA
GAGCTTTCTTTAGTCCACTC
ATGGGTGACAATAAGATTTCAATTAGCTGCTGACTCATTCATCCAAATGTTGAGTAAAATATATAGAAACATATA
CTCATCAAATGAGTGAATGATGCGGGAGACAAATTGAATCTTAAGTTTCCTATAC
TTGGACTGAAGGGAGCTCCC
TTTTC
dot-bracket secondary structure
.(((.
(((((..((((((((((...
(((((.(((..(((((((.(((((.(((.(((..(((((((..((..((.((((((.................))
)))).))..))..)))))))..))).)).).)))))))))))).))).)))))..
.))))))))))..))))).)
))...
SIMILARITIES
miRBase
gma-MIR319b
:
7e-59
PMRD
gma-miR319b
:
7e-59
microPC
miR319
:
1e-51
UniProt
no hits
RFAM
MIR159: 3e-98
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
degradome data
download this record
evidence:
454
references
[
1
] Bonnet E,
Unpublished (2007).
,
[
2
] Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R,
New Phytol. 184:85-98(2009).
,
"Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families"