ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR395
source: miRBase, original name: mtr-MIR395d (MI0005071)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAAGTGTTTGGGGGAACTC miRNA* GTTCCTTTGAACGCTTCATGC mismatches: 2 bulges: 0 |
pre-miRNA
GAGTTCCTTTGAACGCTTCATGCATGAGAATATCTATTTGGTCTAAAATCCATTAGAAAAATAGTTCTTCTTAAATGAAGTGTTTGGGGGAACTC
dot-bracket secondary structure
(((((((((..((((((((((...((((((...((((((..(((((......))))).))))))...)))))).))))))))))..)))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L, Cell Res. 15:631-638(2005)., "Molecular evolution of the rice miR395 gene family"
GAGTTCCTTTGAACGCTTCATGCATGAGAATATCTATTTGGTCTAAAATCCATTAGAAAAATAGTTCTTCTTAAATGAAGTGTTTGGGGGAACTC
dot-bracket secondary structure
(((((((((..((((((((((...((((((...((((((..(((((......))))).))))))...)))))).))))))))))..)))))))))
SIMILARITIES| miRBase mtr-MIR395q: 5e-49 PMRD mtr-miR395d: 5e-49 microPC miR395: 0.00007 | UniProt no hits RFAM mir-395: 9e-48 |
Identical with: mtr-MIR395q from miRBase (MNEST040724) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L, Cell Res. 15:631-638(2005)., "Molecular evolution of the rice miR395 gene family"
