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ABOUT THIS RECORD

ID: MNEST040719
species: Medicago truncatula
miRNA family: MIR395
source: miRBase, original name: mtr-MIR395l (MI0005079)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGAAGTGTTTGGGGGAACTC

miRNA*
GTTCCTTTGAACGCTTCATGC

mismatches: 2
bulges: 0

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pre-miRNA
GAGTTCCTTTGAACGCTTCATGCATGAGAATATCTATCTATTTGGTCTAAAGTCCATTAGAAAAGATAGCCATTTTTTCAATGAAGTGTTTGGGGGAACT
C


dot-bracket secondary structure
(((((((((..((((((((((....((((((..((((((...(((.(....).))).......))))))..))))))...))))))))))..))))))))
)



SIMILARITIES
miRBase mtr-MIR395r: 1e-52

PMRD mtr-miR395n: 1e-52

microPC miR395: 0.00008
UniProt no hits

RFAM mir-395: 2e-51

Identical with: mtr-MIR395r from miRBase (MNEST040725)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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references

[1] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L, Cell Res. 15:631-638(2005)., "Molecular evolution of the rice miR395 gene family"




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