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ABOUT THIS RECORD
ID:
MNEST040722
species:
Medicago truncatula
miRNA family:
MIR395
source:
miRBase, original name:
mtr-MIR395o
(
MI0005082
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGAAGTGTTTGGGGGAACTC
miRNA*
GTTCCTCTGAACTCTTCATCT
mismatches:
3
bulges:
0
View larger
pre-miRNA
GA
GTTCCTCTGAACTCTTCATCT
AAAGGGCTATAGCAAGAAAGAAAGGAAAATCCTTGTATG
ATGAAGTGTTTGGGGGAACTC
dot-bracket secondary structure
((
(((((((..(((.(((((((.
.....((....))........((((.....))))....)
)))))).)))..)))))))))
SIMILARITIES
miRBase
sbi-MIR395f
:
0.00006
PMRD
mtr-miR395o
:
6e-42
microPC
miR395
:
0.000004
UniProt
no hits
RFAM
mir-395: 1e-40
Identical with:
mtr-miR395o
from PMRD (
MNEST048746
)
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L,
Cell Res. 15:631-638(2005).
,
"Molecular evolution of the rice miR395 gene family"