ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR396
source: miRBase, original name: mtr-MIR396b (MI0005622)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCCACAGCTTTCTTGAACTG miRNA* GTTCAATAAAGCTGTGGGAAG mismatches: 1 bulges: 0 |
pre-miRNA
TATTCTTCCACAGCTTTCTTGAACTGCATCCAAATTGAGTTCCTTTGCATTGCCATGGCCATTGTTTTGCGGTTCAATAAAGCTGTGGGAAGATA
dot-bracket secondary structure
(((..((((((((((((.((((((((((..(((.....((......))...((....))..)))...)))))))))).))))))))))))..)))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Bonnet E, Unpublished (2007).,
TATTCTTCCACAGCTTTCTTGAACTGCATCCAAATTGAGTTCCTTTGCATTGCCATGGCCATTGTTTTGCGGTTCAATAAAGCTGTGGGAAGATA
dot-bracket secondary structure
(((..((((((((((((.((((((((((..(((.....((......))...((....))..)))...)))))))))).))))))))))))..)))
SIMILARITIES| miRBase gma-MIR396a: 0.000000000000001 PMRD gma-miR396a: 0.000000000000001 microPC miR396: 0.000000000001 | UniProt no hits RFAM MIR396: 9e-48 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Bonnet E, Unpublished (2007).,
