ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR398
source: miRBase, original name: mtr-MIR398b (MI0005602)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGGTCGACATGAGACCACATG mismatches: 3 bulges: 0 |
pre-miRNA
TTCTACAGGGTCGACATGAGACCACATGAAGCTATCATATTTGTCTATGTTATCCAACTCATGTGTTCTCAGGTCGCCCCTGCTGAA
dot-bracket secondary structure
.((..(((((.((((.(((((.(((((((......((((......)))).........))))))).))))).)))).)))))..)).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
TTCTACAGGGTCGACATGAGACCACATGAAGCTATCATATTTGTCTATGTTATCCAACTCATGTGTTCTCAGGTCGCCCCTGCTGAA
dot-bracket secondary structure
.((..(((((.((((.(((((.(((((((......((((......)))).........))))))).))))).)))).)))))..)).
SIMILARITIES| miRBase mtr-MIR398c: 0.000000000000001 PMRD mtr-miR398a: 4e-31 microPC miR398: 4e-31 | UniProt no hits RFAM MIR398: 5e-43 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Bonnet E, Unpublished (2007).,
