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ABOUT THIS RECORD

ID: MNEST040733
species: Medicago truncatula
miRNA family: MIR399
source: miRBase, original name: mtr-MIR399c (MI0001748)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGATTTGCCCTG

miRNA*
GGGAAAATCTCTTTTGGCAGA

mismatches: 1
bulges: 0

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pre-miRNA
GTTCTGCTGTTGAGGAATGATAGGGAAAATCTCTTTTGGCAGAGAGGAGTAAAAATCTTAAACAGGAATGTTTCTGGTTTGCCAAAGGAGATTTGCCCTG
CCATTTTTGACAGCTATTG


dot-bracket secondary structure
.....(((((..((.((((.(((((.(((((((((((((((((..((((......((((....))))....))))..))))))))))))))))).)))))
.))))))..))))).....



SIMILARITIES
miRBase mtr-MIR399h: 0.000000000000007

PMRD mtr-miR399c: 3e-63

microPC miR399: 0.000006
UniProt no hits

RFAM mir-399: 1e-50

Identical with: mtr-miR399c from PMRD (MNEST048752)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"




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