ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR399
source: miRBase, original name: mtr-MIR399d (MI0001744)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGCTGCCCTA miRNA* GGGCATGTCTCTATTGGCAGG mismatches: 3 bulges: 0 |
pre-miRNA
TAAAGTAAGCAAATCAGTCATAGGGCATGTCTCTATTGGCAGGTGATATGGTGATATTTCATTTGACTTTAAGGCTCTAAAAATTCACTTGCCAAAGGAG
AGCTGCCCTACGAGTGTTTAGCTTAAACA
dot-bracket secondary structure
.....(((((.((.((.((.(((((((..(((((.(((((((((((...(((((....))))).((((....)).)).......))))))))))).))))
)..))))))).)).)).)).)))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
TAAAGTAAGCAAATCAGTCATAGGGCATGTCTCTATTGGCAGGTGATATGGTGATATTTCATTTGACTTTAAGGCTCTAAAAATTCACTTGCCAAAGGAG
AGCTGCCCTACGAGTGTTTAGCTTAAACA
dot-bracket secondary structure
.....(((((.((.((.((.(((((((..(((((.(((((((((((...(((((....))))).((((....)).)).......))))))))))).))))
)..))))))).)).)).)).)))))....
SIMILARITIES| miRBase mtr-MIR399n: 2e-49 PMRD mtr-miR399d: 3e-69 microPC miR399: 0.0004 | UniProt no hits RFAM mir-399: 0.0001 |
Identical with: mtr-miR399d from PMRD (MNEST048753) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
