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ABOUT THIS RECORD

ID: MNEST040747
species: Medicago truncatula
miRNA family: MIR399
source: miRBase, original name: mtr-MIR399q (MI0012024)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCAAAGGAGAGCTGCTCTT

miRNA*
GGGCATATCTCCTTTGGCAGG

mismatches: 2
bulges: 0

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pre-miRNA
GTAAGCAAATCATTCAAAGGGCATATCTCCTTTGGCAGGTATAATGGGTGGTTGCTAGTTTATTTTACATCTATATTAAAATTTTATGTGTTTATTTATC
AAATAAAAAATAAAAAAAACTATCATGGTAAACAACTTGCCAAAGGAGAGCTGCTCTTTGAGTGTTTAGCTTAG


dot-bracket secondary structure
.(((((.((.(((((((((((((..(((((((((((((((...(((((((.................))))))).......((((((...((((((....
.))))))..))))))...................)))))))))))))))..))))))))))))).)).))))).



SIMILARITIES
miRBase mtr-MIR399b: 0.0000000001

PMRD mtr-miR399b: 0.0000000001

microPC no hits
UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"




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