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ABOUT THIS RECORD

ID: MNEST040754
species: Medicago truncatula
miRNA family: MIR2629
source: miRBase, original name: mtr-MIR2087 (MI0010544)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GAAGTAAAGAACCGGCTGCAG

miRNA*
GCAGTCGGTTTCTTACTTCGG

mismatches: 2
bulges: 0

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pre-miRNA
GCTTGATGAAAACTGCTCTTGACACATATGATAGAGCTAAAAAACATATGTAAAAGACGAAAATGCCCATGTAGCAGTTTACTACCGAAGTAAAGAACCG
GCTGCAG
TTAACTGCTGAAGTGTGAAGTTTTTTTTTTTTTTTCTTTTTCGTCGGCAGTTAACTGCAGTCGGTTTCTTACTTCGGTAGTTAACCGTTGCAG
GGGCATTTTCGTCATTTACATGTGTTTTTCAGCCCTATCATATGTGTCAACAGCAATTTTCTAGC


dot-bracket secondary structure
(((....(((((.((((.((((((((((((((((.(((.(((((((((((((((.(((((((((((((.((((((.(((.(((((((((((((..(((((
(((((((
(((((((((((.....((((...............))))....)))))))))))))))))))))))..))))))))))))).))).)))))).
))))))))))))).))))))))))))))).))).)))))))))))))))).)))).))))).)))



SIMILARITIES
miRBase mtr-MIR2629c: 0.00005

PMRD mtr-miR2087: 2e-112

microPC no hits
UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern, Solexa

references

[1] Szittya G, Moxon S, Santos DM, Jing R, Fevereiro MP, Moulton V, Dalmay T, BMC Genomics. 9:593(2008)., "High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families"




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