ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR2111
source: miRBase, original name: mtr-MIR2111f (MI0011908)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATCTGCATCCTGAGGTTTA miRNA* AGCCTTGGATTGTAGATTATT mismatches: 4 bulges: 0 |
pre-miRNA
ATATTGGGTGGGGATGGGATAATCTGCATCCTGAGGTTTAGAACAATAGTTTCTTCATTTCCTTAAAAAGAAAATAGTTGCGTAATTGTTTCTAAGCCTT
GGATTGTAGATTATTTTTTCCTTAACATCAATGC
dot-bracket secondary structure
.((((((.((((((..((((((((((((..(..((((((((((((((.((..((...((((........))))..))..))...)))).)))))))))).
.)..))))))))))))..))))))...)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
ATATTGGGTGGGGATGGGATAATCTGCATCCTGAGGTTTAGAACAATAGTTTCTTCATTTCCTTAAAAAGAAAATAGTTGCGTAATTGTTTCTAAGCCTT
GGATTGTAGATTATTTTTTCCTTAACATCAATGC
dot-bracket secondary structure
.((((((.((((((..((((((((((((..(..((((((((((((((.((..((...((((........))))..))..))...)))).)))))))))).
.)..))))))))))))..))))))...)))))).
SIMILARITIES| miRBase mtr-MIR2111r: 3e-23 PMRD bna-miR2111b: 0.0001 microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454
references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
