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ABOUT THIS RECORD
ID:
MNEST040918
species:
Medicago truncatula
miRNA family:
MIR2640
source:
miRBase, original name:
mtr-MIR2640b
(
MI0011955
)
Taxonomy by NCBI:
Medicago truncatula
Medicago
Trifolieae
Papilionoideae
Fabaceae
Fabales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCTTGCCGGAGCTGGACTAC
miRNA*
GGAATAGTTTTTGCAAAGAA
mismatches:
6
bulges:
0
View larger
pre-miRNA
A
TTCCTTGCCGGAGCTGGACTAC
AGGTAAAAGTTAATTCAGAGATACTATTGTTGCAAAATATAACTTTCTTGTACTGAAATTAGTTAGGCTTAGGCGGC
ATAAACCTTTTTCTACACATTTGACTCAATGAATTTTTTAAGGGATTTAAAGAGCAACCATTCTATTTTCTTGAATTACATGCCAATATTGAGAAATAAG
TAGAGTACTTACCTAGAATTATGATTACACTAGTGAGTAGCCAGCCGCACGCCTCTCTCTTTAACTTCTGA
GGAATAGTTTTTGCAAAGAA
dot-bracket secondary structure
.
(((.((((..((((((..((.(
(((....((((((...(((((..................((((((((.......)))...)))))(((....(((((
...........(((((....(((.(((..((((((((....))))))))..)))))).........(((((..((((.......))).)..)))))...)
)))).(((((((.(((.............))))))))))....)))))..)))..))))))))))))))).
))..))))))..)))).)))
SIMILARITIES
miRBase
mtr-MIR2640a
:
2e-165
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
Identical with:
mtr-MIR2640a
from miRBase (
MNEST040917
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
evidence:
454
references
[
1
] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M,
Plant Cell. 21:2780-2796(2009).
,
"Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"