ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR2644
source: miRBase, original name: mtr-MIR2644b (MI0011960)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CACTTCAGATTGATGGTGTGT miRNA* ACACCTTTGATCTGAAGTGTC mismatches: 3 bulges: 0 |
pre-miRNA
TCGTGTCGTTGACCAAGTGGATACACCTTTGATCTGAAGTGTCAATGCTACATAGGTTACTAGCAGCAGCGAAGGGTATTTAGGTTATTGAAATATCATC
AAAAATAAACTTTGTCAACAAAACACCAAAGTCTCTTAAGAGTTTCACATTAGAATGATACATTAAGATTATGTAGCACCAACACTTCAGATTGATGGTG
TGTCTGGTATCCGACACGT
dot-bracket secondary structure
.(((((((...((((....((((((((.(..(((((((((((...((((((((((((...........((((((..(((((..(....(((....))).)
..)))))..)))))).........)))......((((((..((.(((........))).)).)))))).)))))))))...)))))))))))..).))))
))))))))...))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
TCGTGTCGTTGACCAAGTGGATACACCTTTGATCTGAAGTGTCAATGCTACATAGGTTACTAGCAGCAGCGAAGGGTATTTAGGTTATTGAAATATCATC
AAAAATAAACTTTGTCAACAAAACACCAAAGTCTCTTAAGAGTTTCACATTAGAATGATACATTAAGATTATGTAGCACCAACACTTCAGATTGATGGTG
TGTCTGGTATCCGACACGT
dot-bracket secondary structure
.(((((((...((((....((((((((.(..(((((((((((...((((((((((((...........((((((..(((((..(....(((....))).)
..)))))..)))))).........)))......((((((..((.(((........))).)).)))))).)))))))))...)))))))))))..).))))
))))))))...))))))).
SIMILARITIES| miRBase mtr-MIR2644a: 2e-118 PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
