ABOUT THIS RECORDspecies: Medicago truncatula
source: miRBase, original name: mtr-MIR2645 (MI0011961)
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTCTAGAGATGAGCATATAT miRNA* ATTGGGTTCATTTTTG mismatches: 6 bulges: 1 |
pre-miRNA
ATTTCTAGAGATGAGCATATATTGAAGAATTATGGAGTAGATGAAGTTTACAAAGTTCCTCTCTTGGATTGGACTAACTCTCTTCAATTATTGTGTCGAA
AAGCTTTCAAACTTGATCATATTTTGAATAGTTATGAAGGGTTGGTTAATGGCATACTACATTATGCCAATGGCCTACCACTTGCAATTAAAGTATTGGG
TTCATTTTTG
dot-bracket secondary structure
.....(((((((((((..(((((....((((((.((((((((.((((((..(((((((..(.(...(((((((.........)))))))...).)..)).
..))))).)))))).))).)))))...)))))).((((((((.(((((.(((((((......))))))).))))).))).))).)).....)))))...)
))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
ATTTCTAGAGATGAGCATATATTGAAGAATTATGGAGTAGATGAAGTTTACAAAGTTCCTCTCTTGGATTGGACTAACTCTCTTCAATTATTGTGTCGAA
AAGCTTTCAAACTTGATCATATTTTGAATAGTTATGAAGGGTTGGTTAATGGCATACTACATTATGCCAATGGCCTACCACTTGCAATTAAAGTATTGGG
TTCATTTTTG
dot-bracket secondary structure
.....(((((((((((..(((((....((((((.((((((((.((((((..(((((((..(.(...(((((((.........)))))))...).)..)).
..))))).)))))).))).)))))...)))))).((((((((.(((((.(((((((......))))))).))))).))).))).)).....)))))...)
))))))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q40392|TMVRN_NICGU: 0.0002 RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454
references
[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
