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ABOUT THIS RECORD

ID: MNEST040929
species: Medicago truncatula
miRNA family: MIR2647
source: miRBase, original name: mtr-MIR2647c (MI0011966)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATTCACGGGGACGAACCTCCT

miRNA*
GAGGGTTGCCCCTGTTGAA

mismatches: 3
bulges: 1

View larger
pre-miRNA
AATTCACGGGGACGAACCTCCTTCGTTGAAAGTTTGCTTTATTCTTTTGATATATCTATCCATGATACAAGGAAGTAATGCATTTAAGTTCAATCAAGCT
TGGCCTTCATCAGAATTTCCGTTGACGGGACTCCACAGGAGGTACAACCTTTAAGTTGATACTGAGGGATGGAGGGAGGGTTGCCCCTGTTGAA


dot-bracket secondary structure
..(((((((((.(((.((((((((.(((((..(.(((.(((((..((((...((((.......))))))))..))))).)))...)..))))).......
..((((((....((..(((((....))))).))....))))))....((((((.((....))))))))...)))))))).))).))))).))))



SIMILARITIES
miRBase mtr-MIR2647b: 9e-108

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits

Identical with: mtr-MIR2647b from miRBase (MNEST040928)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: 454

references

[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"




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