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ABOUT THIS RECORD

ID: MNEST040968
species: Medicago truncatula
miRNA family: MIR2657
source: miRBase, original name: mtr-MIR2657b (MI0012005)

Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGTTATTTCATCGATTTTGTTG

miRNA*
AGAAAAATGGTGAAAAGA

mismatches: 2
bulges: 4

View larger
pre-miRNA
CCAGATTCCTTGACATTCAAGAAAAATGGTGAAAAGAAGAAATTTCAAGTTATTGTGCAAGCAAGAAGTGTGACTCCAAGGGGAAGATACCAATTTGGAG
AACTGCAATGGACAAATGGAAAACACATTGTAAGGAGTCCCGTTACTGTTCAACGCAAATGAAAGATTATTCCAAATAGTTGGATTTAATGTGGTATTAT
TGGATTATACTAGTATGCTTCTGTTATTTCATCGATTTTGTTGTTGTACTTGTTGCTGT


dot-bracket secondary structure
.(((........(((..(((.((((.(((((((((((((.............((((....))))..(((((((.(((((......(((((((....(((.
..((((((((...............)))))).))...)))(((((..(((((((......(((......)))......))))))).)))))))))))).)
)))))))))))......)))))....)))))))).)))).))).)))........))).



SIMILARITIES
miRBase mtr-MIR2657a: 2e-146

PMRD no hits

microPC no hits
UniProt sp|O65351|SUBL_ARATH: 0.00001

RFAM no hits

Identical with: mtr-MIR2657a from miRBase (MNEST040967)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: 454

references

[1] Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M, Plant Cell. 21:2780-2796(2009)., "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"




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