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ABOUT THIS RECORD

ID: MNEST041292
species: Populus trichocarpa
miRNA family: MIR156
source: miRBase, original name: ptc-MIR156e (MI0002188)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGACAGAAGAGAGTGAGCAC

miRNA*
GCTCATTTCTCTTTCTGTCACT

mismatches: 0
bulges: 2

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pre-miRNA
CATTAGAAATTGACAGAAGAGAGTGAGCACACAGAGGCATATTTGTATAAAATTATACCATTGCTTTTGCGTGCTCATTTCTCTTTCTGTCACTTCCAGA


dot-bracket secondary structure
.....(((..((((((((((((((((((((.((((((((.....(((((....)))))...)))))))).))))))).))))).)))))))).)))....



SIMILARITIES
miRBase ptc-MIR156c: 3e-35

PMRD ptc-miR156e: 5e-52

microPC miR156: 0.000000001
UniProt no hits

RFAM mir-156: 2e-24

Identical with: ptc-miR156e from PMRD (MNEST051595)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
[2] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"




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