ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR159
source: miRBase, original name: ptc-MIR159f (MI0002200)
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATTGGAGTGAAGGGAGCTCGA miRNA* GAGCTCTCCCCACTCCATGC mismatches: 3 bulges: 1 |
pre-miRNA
GAGGCTCAATGGAGCTCTCCCCACTCCATGCCTGAAAGGAGTTCGATGGTAGACCATGGCTGCTAGTTCATGAATACCCTTGGGTGCGCAGAATTAGCAA
CGGTGCAGGCGAAGTTGCGCAGGCTAAGGGTCTGCATGACCTAGGAGACGTGGTTACCCTGACCCTTTTTGTATTGGAGTGAAGGGAGCTCGATGGTCTT
T
dot-bracket secondary structure
((((((..((.((((((((..((((((((((..((((((.(((....(((.(((((((.((.((((.(((((...((((((((.(((((((.....((..
........))....)))))))..))))))))...))))).)))).)).))))))))))..))))))))).))).)))))))..)))))))).))))))))
.
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
GAGGCTCAATGGAGCTCTCCCCACTCCATGCCTGAAAGGAGTTCGATGGTAGACCATGGCTGCTAGTTCATGAATACCCTTGGGTGCGCAGAATTAGCAA
CGGTGCAGGCGAAGTTGCGCAGGCTAAGGGTCTGCATGACCTAGGAGACGTGGTTACCCTGACCCTTTTTGTATTGGAGTGAAGGGAGCTCGATGGTCTT
T
dot-bracket secondary structure
((((((..((.((((((((..((((((((((..((((((.(((....(((.(((((((.((.((((.(((((...((((((((.(((((((.....((..
........))....)))))))..))))))))...))))).)))).)).))))))))))..))))))))).))).)))))))..)))))))).))))))))
.
SIMILARITIES| miRBase ptc-MIR159e: 0.0000000000002 PMRD ptc-miR159f: 6e-112 microPC miR159: 0.00001 | UniProt no hits RFAM MIR159: 1e-110 |
Identical with: ptc-miR159f from PMRD (MNEST051607) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
