miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST041304
species: Populus trichocarpa
miRNA family: MIR159
source: miRBase, original name: ptc-MIR159f (MI0002200)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATTGGAGTGAAGGGAGCTCGA

miRNA*
GAGCTCTCCCCACTCCATGC

mismatches: 3
bulges: 1

View larger
pre-miRNA
GAGGCTCAATGGAGCTCTCCCCACTCCATGCCTGAAAGGAGTTCGATGGTAGACCATGGCTGCTAGTTCATGAATACCCTTGGGTGCGCAGAATTAGCAA
CGGTGCAGGCGAAGTTGCGCAGGCTAAGGGTCTGCATGACCTAGGAGACGTGGTTACCCTGACCCTTTTTGTATTGGAGTGAAGGGAGCTCGATGGTCTT
T


dot-bracket secondary structure
((((((..((.((((((((..((((((((((..((((((.(((....(((.(((((((.((.((((.(((((...((((((((.(((((((.....((..
........))....)))))))..))))))))...))))).)))).)).))))))))))..))))))))).))).)))))))..)))))))).))))))))
.



SIMILARITIES
miRBase ptc-MIR159e: 0.0000000000002

PMRD ptc-miR159f: 6e-112

microPC miR159: 0.00001
UniProt no hits

RFAM MIR159: 1e-110

Identical with: ptc-miR159f from PMRD (MNEST051607)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record

references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




Liczniki na strone;