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ABOUT THIS RECORD

ID: MNEST041342
species: Populus trichocarpa
miRNA family: MIR167
source: miRBase, original name: ptc-MIR167d (MI0002238)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGAAGCTGCCAGCATGATCTA

miRNA*
GGTCATGCTCTGACAGCCTCACT

mismatches: 2
bulges: 2

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pre-miRNA
AGGGAAAAGGTGAAGCTGCCAGCATGATCTATCTTTGGTTAGAGAAGGATAGAAGCGAAAGAACTAACCCTAGCTAGGTCATGCTCTGACAGCCTCACTC
CTTCC


dot-bracket secondary structure
..((((..(((((.(((((.(((((((((((.((..((((((.............(....)..))))))..)).)))))))))))..).)))).))))).
.))))



SIMILARITIES
miRBase ptc-MIR167b: 3e-26

PMRD ptc-miR167d: 6e-55

microPC miR167: 0.00000000009
UniProt no hits

RFAM MIR167_1: 1e-53

Identical with: ptc-miR167d from PMRD (MNEST051645)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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