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ABOUT THIS RECORD

ID: MNEST041357
species: Populus trichocarpa
miRNA family: MIR169
source: miRBase, original name: ptc-MIR169c (MI0002253)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCGA

miRNA*
GGCAGGTTTTCCTTGGCTACA

mismatches: 2
bulges: 0

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pre-miRNA
AAGTTTGATGCAGCCAAGGATGACTTGCCGACGACTCAATTTTTGCTTCCATATGGTAGAAGAGATGAATAGGTTGGCAGGTTTTCCTTGGCTACATTTT
CC


dot-bracket secondary structure
......((((.(((((((((.(((((((((((.(.(((.(((((.((.((....)).))))))).))).)..))))))))))).))))))))).))))..
..



SIMILARITIES
miRBase ptc-MIR169b: 0.000000000005

PMRD ptc-miR169c: 4e-53

microPC miR169: 0.00000002
UniProt no hits

RFAM MIR169_2: 6e-52

Identical with: ptc-miR169c from PMRD (MNEST051660)

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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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