ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR169
source: miRBase, original name: ptc-MIR169e (MI0002255)
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGCTGTCCTTGGCTATG mismatches: 4 bulges: 0 |
pre-miRNA
TATCGTGGCGCAGCCAAGGATGACTTGCCGGCAAGCTCCTCACACGTATTTTGTTTCGAGTTTCATTGATGGCATTGCTAGATAGATATATATGATTTCG
TAATTCAAACTTTTGGGCCATTGTCTGGTTGAAATGATCGGCAAGCTGTCCTTGGCTATGTCTCTA
dot-bracket secondary structure
....(.((((.((((((((((..(((((((...(((((...(((.......)))...)))))(((((.....((..(((((((((.....((((....))
))..((((....))))....))))))))))).))))).)))))))..)))))))))).)))).)..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
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references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
TATCGTGGCGCAGCCAAGGATGACTTGCCGGCAAGCTCCTCACACGTATTTTGTTTCGAGTTTCATTGATGGCATTGCTAGATAGATATATATGATTTCG
TAATTCAAACTTTTGGGCCATTGTCTGGTTGAAATGATCGGCAAGCTGTCCTTGGCTATGTCTCTA
dot-bracket secondary structure
....(.((((.((((((((((..(((((((...(((((...(((.......)))...)))))(((((.....((..(((((((((.....((((....))
))..((((....))))....))))))))))).))))).)))))))..)))))))))).)))).)..
SIMILARITIES| miRBase vvi-MIR169w: 0.0000001 PMRD ptc-miR169e: 4e-91 microPC miR169: 0.000008 | UniProt no hits RFAM MIR169_2: 7e-90 |
Identical with: ptc-miR169e from PMRD (MNEST051662) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: not a miRNA
additional data
download this record
references
[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
