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ABOUT THIS RECORD

ID: MNEST041360
species: Populus trichocarpa
miRNA family: MIR169
source: miRBase, original name: ptc-MIR169f (MI0002256)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CAGCCAAGGATGACTTGCCGG

miRNA*
GGCAAGTCATCTCTGGCTACT

mismatches: 3
bulges: 0

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pre-miRNA
TTATGTGGTGCAGCCAAGGATGACTTGCCGGAATAAGCTATGATCAATAGCTATAGCTATGGTATTTTTCATCCTAGGTTTGGCTATATATATATATATA
TATAGCCAGTTAATTGCTATAAATCTCAGCACATTTATGTTTTATATGTCTGCACACAGACACACACATCATTGAATGTTGATGTTCCACCTCCTATGAT
CAGTAGTCAATCGGCAAGTCATCTCTGGCTACTCAACTC


dot-bracket secondary structure
....((.(.(.(((((..(((((((((((((.....((((((((((.(((.((((((.((((......)))).......(((((((((((((....))))
)))))))))......))))))....((((((.....(((.......((((((....)))))).......)))....))))))...........)))))))
)).))))...)))))))))))))..))))).).).))..



SIMILARITIES
miRBase vvi-MIR169w: 0.0000000002

PMRD ptc-miR169f: 1e-98

microPC miR169: 0.0002
UniProt no hits

RFAM MIR169_2: 2e-97

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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