ABOUT THIS RECORDspecies: Populus trichocarpa
miRNA family: MIR169
source: miRBase, original name: ptc-MIR169k (MI0002261)
Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTG miRNA* AGCAAGTGTCCTTGGCTAACG mismatches: 2 bulges: 2 |
pre-miRNA
TCTTGTTTGGTAGCCAAGGATGACTTGCCTGTAGCCTCCCTCGGATTCATGAACACGAGCATTTATGTGGTGCTCAAAAGAAAAGGAGAGAATGATCCCA
GCTGGCAGCGACAAGGTCAATCCATTGAAGTAGCGAGAAGCAGGTGATTTATAGCTAGAATCCACAAGAGGTTCCCAGCAAGTGTCCTTGGCTAACGAGA
CGG
dot-bracket secondary structure
...(((((.((((((((((((.((((((..(.((((((....((((((........(((((((.....)))))))...........((.....((((((.
(((.((.((..(((((.....)).)))..)).))....))).)).)))).....)).))))))....)))))).)..)))))))))))))))).)).)))
)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
TCTTGTTTGGTAGCCAAGGATGACTTGCCTGTAGCCTCCCTCGGATTCATGAACACGAGCATTTATGTGGTGCTCAAAAGAAAAGGAGAGAATGATCCCA
GCTGGCAGCGACAAGGTCAATCCATTGAAGTAGCGAGAAGCAGGTGATTTATAGCTAGAATCCACAAGAGGTTCCCAGCAAGTGTCCTTGGCTAACGAGA
CGG
dot-bracket secondary structure
...(((((.((((((((((((.((((((..(.((((((....((((((........(((((((.....)))))))...........((.....((((((.
(((.((.((..(((((.....)).)))..)).))....))).)).)))).....)).))))))....)))))).)..)))))))))))))))).)).)))
)).
SIMILARITIES| miRBase ptc-MIR169m: 0.0000000002 PMRD ptc-miR169k: 4e-113 microPC miR169: 6e-66 | UniProt no hits RFAM MIR169_2: 7e-112 |
Identical with: ptc-miR169k from PMRD (MNEST051668) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
references
[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
