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ABOUT THIS RECORD

ID: MNEST041372
species: Populus trichocarpa
miRNA family: MIR169
source: miRBase, original name: ptc-MIR169r (MI0002268)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCCAAGGATGACTTGCCTA

miRNA*
GGCAGTCTACTTTGGTTATC

mismatches: 2
bulges: 1

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pre-miRNA
GAGGGTTTGGTAGCCAAGGATGACTTGCCTATTTCCTCCATAAGGCTTTAAAAAGCATGAAATGTGGTTTAGAGCTCAATTGAAGGGTTCATAGGCAGTC
TACTTTGGTTATC
CTAGCT


dot-bracket secondary structure
...((((.(((((((((((..((((.((((((.((((.((...(((((((((..((((...))))..)))))))))....)).))))...))))))))))
..)))))))))))
..))))



SIMILARITIES
miRBase ptc-MIR169u: 1e-16

PMRD ptc-miR169r: 3e-63

microPC miR169: 0.000001
UniProt no hits

RFAM MIR169_5: 5e-62

Identical with: ptc-miR169r from PMRD (MNEST051675)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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