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ABOUT THIS RECORD

ID: MNEST041389
species: Populus trichocarpa
miRNA family: MIR171
source: miRBase, original name: ptc-MIR171i (MI0002285)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGATTGAGCCGTGCCAATATC

miRNA*
TATTGGCCTGGTTCACTCAGA

mismatches: 2
bulges: 0

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pre-miRNA
GAGTGACTATGATATTGGCCTGGTTCACTCAGATCACGACTTCAGAGCAAAGTGTCTTTCTTCTTCTTCTTCTTCTTCTTGTTTTATGTTCGTTTGATTT
GATTGAGCCGTGCCAATATC
TCAGTACTC


dot-bracket secondary structure
(((((.((..(((((((((.(((((((.(((((((((((.(..(((((((............................)))))))..).))))..)))))
)).))))))).)))))))))
..)))))))



SIMILARITIES
miRBase zma-MIR171d: 0.0000000004

PMRD ptc-miR171i: 2e-24

microPC miR171: 0.00000003
UniProt no hits

RFAM MIR171_1: 3e-17

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Dezulian T, Palatnik JF, Huson DH, Weigel D, http://genomebiology.com/2005/6/11/p13 (2005)., "Conservation and divergence of microRNA families in plants"
[2] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"
[3] Lu S, Sun YH, Shi R, Clark C, Li L, Chiang VL, Plant Cell. 17:2186-2203(2005)., "Novel and mechanical stress-responsive MicroRNAs in Populus trichocarpa that are absent from Arabidopsis"




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