ABOUT THIS RECORDspecies: Vitis vinifera
miRNA family: MIR156
source: miRBase, original name: vvi-MIR156e (MI0006489)
Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAGGAGAGTGAGCAC miRNA* GCTTACTCCCTATCTGTCACC mismatches: 0 bulges: 3 |
pre-miRNA
GTATGGTAGGTGACAGAGGAGAGTGAGCACTCATGGTTCTTTTCTTGCATGAAGTTTCTATGCTTGAAGCTCTGTGTGCTTACTCCCTATCTGTCACCCC
TCAAGCAT
dot-bracket secondary structure
((.(((..(((((((((((.((((((((((.((.(((....(((..(((((.......)))))..)))))).)).))))))))))))..)))))))))..
))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
GTATGGTAGGTGACAGAGGAGAGTGAGCACTCATGGTTCTTTTCTTGCATGAAGTTTCTATGCTTGAAGCTCTGTGTGCTTACTCCCTATCTGTCACCCC
TCAAGCAT
dot-bracket secondary structure
((.(((..(((((((((((.((((((((((.((.(((....(((..(((((.......)))))..)))))).)).))))))))))))..)))))))))..
))).))..
SIMILARITIES| miRBase ath-MIR156f: 0.0000000000004 PMRD vvi-miR156e: 1e-56 microPC miR156: 0.00000008 | UniProt no hits RFAM mir-156: 2e-39 |
Identical with: vvi-miR156e from PMRD (MNEST054770) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
references
[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
