miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST041570
species: Vitis vinifera
miRNA family: MIR159
source: miRBase, original name: vvi-MIR159a (MI0006493)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTTGGAGTGAAGGGAGCTCTC

miRNA*
GAGCTCCTTTACGCTCCAGTTC

mismatches: 1
bulges: 1

View larger
pre-miRNA
GGGTTTATGGGAGCTCCTTTACGCTCCAGTTCTGAAAGGAGATGATGGTATCCACAGCTGCTGGTTCATGAGTACCTATGGCTGCACAATATATATAGCA
ATGTTGTGTGCAAACTATGGGTGTGCATGACCTCGGAGAAGTGGTTGCCTTGATCTTTCTGGCCTTGGAGTGAAGGGAGCTCTCATAACCCTTC


dot-bracket secondary structure
(((((.((((((((((((((.((((((((..((..(((((......((((.((((..((.(.(((.((((..(((((((((.((((((..((((......
))))..))))))..)))))))))..)))))))..).))..)))).))))....)))))..))..)))))))))))))))))))))))))))...



SIMILARITIES
miRBase vvi-MIR159b: 3e-24

PMRD vvi-miR159a: 9e-108

microPC miR319: 0.000002
UniProt no hits

RFAM MIR159: 2e-106

Identical with: vvi-miR159a from PMRD (MNEST054775)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Array

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




Liczniki na strone;