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ABOUT THIS RECORD

ID: MNEST041573
species: Vitis vinifera
miRNA family: MIR160
source: miRBase, original name: vvi-MIR160a (MI0006496)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGAATGCCATC

miRNA*
TGGCATCAGAGGAGTCATGCAGG

mismatches: 2
bulges: 2

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pre-miRNA
GGGGTTGATCTGCCTGGCTCCCTGAATGCCATCTAAGAAGCTTGTCAAGGTTGTTGACTCTCTTCCTAGTTGGCATCAGAGGAGTCATGCAGGCCCCAAC
ATT


dot-bracket secondary structure
(((((....((((.(((((((((((.(((((.(((.((((...(((((.....)))))...)))).))).))))))))).))))))).)))))))))...
...



SIMILARITIES
miRBase aqc-MIR160a: 4e-22

PMRD vvi-miR160a: 9e-54

microPC no hits
UniProt no hits

RFAM mir-160: 0.00000000002

Identical with: vvi-miR160a from PMRD (MNEST054778)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Array, Solexa

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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