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ABOUT THIS RECORD

ID: MNEST041576
species: Vitis vinifera
miRNA family: MIR160
source: miRBase, original name: vvi-MIR160d (MI0006499)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCCTGGCTCCCTGTATGCCA

miRNA*
GCGTGCGAGGAGCCATGCATG

mismatches: 2
bulges: 0

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pre-miRNA
CATACTTACATGCCTGGCTCCCTGTATGCCATTTGCAAAGTCCACCCGAGGATTGGTAGCCTTCGCGGATGGCGTGCGAGGAGCCATGCATGCATCTTGC
TT


dot-bracket secondary structure
........(((((.(((((((.((((((((((((((.(((.(.(((........))).).))).)))))))))))))).))))))).)))))........
..



SIMILARITIES
miRBase tcc-MIR160b: 0.000000000000005

PMRD vvi-miR160d: 4e-53

microPC miR160: 0.00000000000009
UniProt no hits

RFAM mir-160: 2e-42

Identical with: vvi-miR160d from PMRD (MNEST054781)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Array, Solexa
deep sequencing data evidence

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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