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ABOUT THIS RECORD

ID: MNEST041578
species: Vitis vinifera
miRNA family: MIR162
source: miRBase, original name: vvi-MIR162 (MI0006502)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGATAAACCTCTGCATCCAG

miRNA*
GGATGCAGCGGTTCATCGATC

mismatches: 2
bulges: 0

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pre-miRNA
TGAAGTCACTGGATGCAGCGGTTCATCGATCTCTTCCTGAAATTGTTGTGAAAAAAGCAGATCAAGAATCGGTCGATAAACCTCTGCATCCAGCGTTCAC
TCC


dot-bracket secondary structure
((((..(.((((((((((.((((.(((((((..(((.(((..(((((........))))).))).)))..))))))).)))).)))))))))).))))).
...



SIMILARITIES
miRBase cpa-MIR162a: 2e-20

PMRD vvi-miR162: 9e-54

microPC miR162: 5e-43
UniProt no hits

RFAM MIR162_2: 1e-43

Identical with: miR162 from microPC (MNEST046792)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Array, Solexa
deep sequencing data evidence

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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