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ABOUT THIS RECORD

ID: MNEST041581
species: Vitis vinifera
miRNA family: MIR164
source: miRBase, original name: vvi-MIR164c (MI0006505)

Taxonomy by NCBI:
Vitis vinifera Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGGAGAAGCAGGGCACGTGCA

miRNA*
CAGGGCACGTGCATTACTAGCTCATGCACCACAAACCAATAATCTTTTGCTCGAGTTAGACTCT

mismatches: 9
bulges: 46

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pre-miRNA
TTGAGCAAGATGGAGAAGCAGGGCACGTGCATTACTAGCTCATGCACCACAAACCAATAATCTTTTGCTCGAGTTAGACTCTTGCTTGCTGCTTTGA

dot-bracket secondary structure
...((((((..((((..(((.(...).)))....(((((((..(((...................)))..))))))).))))..)))))).......


SIMILARITIES
miRBase ptc-MIR164e: 2e-17

PMRD vvi-miR164c: 3e-50

microPC miR164: 0.00000000002
UniProt no hits

RFAM MIR164: 6e-49

Identical with: vvi-miR164c from PMRD (MNEST054787)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
degradome data
download this record
evidence: Array, Solexa
deep sequencing data evidence

references

[1] Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro, Nature. 449:463-467(2007)., "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla"
[2] Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS, BMC Genomics. 10:558(2009)., "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera"




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